Meijsing, S.H., Pufall, M.A., So, A.Y., Bates, D.L., Chen, L., Yamamoto, K.R. (2009) DNA-binding site sequence directs glucocorticoid receptor structure and activity. Science 324, 407-410 PDF

Pantoja, C., Huff, J.T., Yamamoto, K.R. (2008) Glucocorticoid Signaling Defines a Novel Commitment State during Adipogenesis In Vitro. Mol. Biol. Cell. 19, 4032-41 PDF

Taubert, S., Hansen, M., Van Gilst, M.R., Cooper, S.M., Yamamoto, K.R. (2008) The Mediator Subunit MDT-15 Confers Metabolic Adaptation to Ingested Material. PLoS Genetics 4, e1000021 PDF

So, A.Y., Cooper, S.B., Feldman, B.J., Manuchehri, M., Yamamoto, K.R. (2008) Conservation Analysis Predicts In Vivo Occupancy of Glucocorticoid Receptor Binding Sequences at Glucocorticoid-Induced Genes. Proc. Natl. Acad. Sci. USA 105; 5745-5749. PDF

So, A.Y., Chaivorapol, C., Bolton, E.C., Li, H., and Yamamoto, K.R. (2007) Determinants of Cell- and Gene-Specific Transcriptional Regulation by the Glucocorticoid Receptor. PloS Genetics 3, e94. PDF

Bolton, E.C., So, A.Y., Chaivorapol, C., Haqq, C.M., Li, H. and Yamamoto. K.R. (2007) Cell- and Gene-Specific Regulation of Primary Target Genes by the Androgen Receptor. Genes Dev, 21, 2005-2017. PDF

Woodruff, P.G., Boushey, H.A., Dolganov, G.M., Barker, C.S., Yang, Y.H., Donnelly, S., Ellwanger, A., Sidhu, S.S., Dao-Pick, T.P., Pantoja, C., Erle, D.J., Yamamoto, K.R., Fahy,. J.V. (2007) Genome-Wide Profiling Identifies Epithelial Cell Genes Associated With Asthma and With Treatment Response to Corticosteroids. Proc. Natl. Acad. Sci. USA 104, 15858-15863. PDF

Meijsing, S.H., Elbi, C., Luecke, H.F., Hager, G.L., and Yamamoto, K.R. (2007) The ligand binding domain controls Glucocorticoid receptor dynamics independent of ligand release. Mol Cell Biol. 2007 Apr;27(7):2442-51. PDF

Feldman, B.F., Streeper, R.S., Farese, R.V. Jr. and Yamamoto, K.R.  (2006) Myostatin modulates adipogenesis to generate adipocytes with favorable metabolic effects. Proc. Natl. Acad. Sci. USA 103, 15675-15680. PDF

Taubert, S., Van Gilst, M.R., Hansen, M., Yamamoto, K.R.  (2006) A Mediator subunit, MDT-15, integrates regulation of fatty acid metabolism by NHR-49-dependent and -independent pathways in C. elegans.  Genes Dev. 20, 1137-1149. PDF

Wang, J-C., Shah, N., Pantoja, C., Meijsing, S.H., Ho, J.D., Scanlan, T.S., Yamamoto, K.R. (2006)  Novel arylpyrazole compounds selectively modulate glucocorticoid receptor regulatory activity. Genes Dev.20, 689-699. PDF

Van Gilst, M.R., Hadjivassiliou, H., and Yamamoto, K.R.  (2005)  A Caenorhabditis elegans nutrient response system partially dependent on nuclear receptor NHR-49. Proc. Natl. Acad. Sci. USA 102, 13496-13501. PDF

Luecke, H.F. and Yamamoto, K.R. (2005). The Glucocorticoid Receptor blocks P-TEFb recruitment by NFkB to effect promoter specific transcriptional repression.  Genes Dev.  19, 1116-1127. PDF

Shostak, Y. and Yamamoto, K.R. (2005) Overlapping but Separable Determinants of DNA Binding and Nuclear Localization Map to the C-terminal End of the C. elegans DAF-12 DNA Binding Domain. J. Biol. Chem. 280, 6554-6560. PDF

Van Gilst, M.R., Hadjivassiliou, H., Jolly, A., and Yamamoto, K.R.  (2005)  Nuclear Hormone Receptor NHR-49 Controls Fat Consumption and Fatty Acid Composition in C. elegans.  PLoS Biol. 3, e53. PDF

Wang, J-C., Derynck, M.K., Nonaka, D..F, Khodabakhsh, D.B., Haqq, C., Yamamoto, K.R. (2004) Chromatin Immunoprecipitation (ChIP) Scanning Identifies Primary Glucocorticoid Receptor Target Genes. Proc. Natl. Acad. Sci. USA 101, 15603-15608. PDF

Shostak, Y., Van Gilst, M.R., Antebi, A., and Yamamoto, K.R. (2004). Identification of C. elegans DAF-12 binding sites, response elements and target genes.  Genes Dev. 18, 2529-2544. PDF

Wang, J-C., Walker, A., Blackwell, T.K., and Yamamoto, K.R. (2004) The Caenorhabditis elegans ortholog of TRAP240, CeTRAP240/let-19, selectively modulates gene expression and is essential for embryogenesis. J. Biol. Chem. 279, 29270-29277. PDF

Freedman N.D. and Yamamoto K.R. (2004) Importin 7 and Importin a/Importin b Are Nuclear Import Receptors for the Glucocorticoid Receptor. Mol. Biol. Cell 15, 2276-2286. PDF

Kian Tee, M., Rogatsky, I., Tzagarakis-Foster, C., Cvoro, A., An, J., Christy, R.J., Yamamoto, K.R. and Leitman, D.C. (2004) Estradiol and selective estrogen receptor modulators differentially regulate target genes with estrogen receptors a and b.  Mol. Biol. Cell  15, 1262-1272. PDF

Rogatsky, I., Wang, J-C., Derynck, M.K., Nonaka, D., Khodabakhsh, D.B., Haqq, C.M., Darimont, B.D., Garabedian, M.J.,  and Yamamoto, K.R. (2003) Target-specific utilization of transcriptional regulatory surfaces by the glucocorticoid receptor.  Proc. Natl. Acad. Sci. USA 100, 13845-13850. PDF

Rogatsky, I., Luecke, H.F., Leitman, D.C., Yamamoto, K.R. (2002) Alternate surfaces of transcriptional co-regulator GRIP1 function in different glucocorticoid receptor activation and repression contexts. Proc. Natl. Acad. Sci. USA. 99, 16701-16706. PDF

Freeman, B.C., Yamamoto, K.R.  (2002) Disassembly of transcriptional regulatory complexes by molecular chaperones.  Science 296, 2232-2235. PDF

Rogatsky, I., Zarember, K.A., Yamamoto, K.R.  (2001) Factor recruitment and TIF2/GRIP1 corepressor activity at a collagenase-3 response element that mediates regulation by phorbol esters and hormones.  EMBO J. 20, 6071-6083. PDF

Freeman, B.C., Yamamoto, K.R.  (2001) Continuous recycling: a mechanism for modulatory signal transduction.  Trends Biochem Sci. 26, 285-290. PDF

Sitcheran, R., Emter, R., Kralli, A., Yamamoto, K.R. (2000) A genetic analysis of glucocorticoid receptor signaling: Identification and characterization of ligand-effect modulators in Saccharomyces cerevisiae.  Genetics 156, 963-972. PDF

Nissen, R.M., Yamamoto, K.R.  (2000) The glucocorticoid receptor inhibits NFkappaB by interfering with serine-2 phosphorylation of the RNA polymerase II carboxy-terminal domain.  Genes Dev. 14, 2314-2329. PDF

van Tilborg, M.A., Lefstin, J.A., Kruiskamp, M., Teuben, J., Boelens, R., Yamamoto, K.R., Kaptein, R.  (2000) Mutations in the glucocorticoid receptor DNA-binding domain mimic an allosteric effect of DNA.  J. Mol. Biol. 301, 947-958. PDF

Jamieson, C.A., Yamamoto, K.R.  (2000) Crosstalk pathway for inhibition of glucocorticoid-induced apoptosis by T cell receptor signaling.  Proc. Natl. Acad. Sci. USA. 97, 7319-7324. PDF

Freeman, B.C., Felts, S.J., Toft, D.O., Yamamoto, K.R.  (2000) The p23 molecular chaperones act at a late step in intracellular receptor action to differentially affect ligand efficacies.  Genes Dev. 14, 422-434. PDF

Diamond, M.I., Robinson, M.R., Yamamoto, K.R.  (2000) Regulation of expanded polyglutamine protein aggregation and nuclear localization by the glucocorticoid receptor.  Proc. Natl. Acad. Sci. USA 97, 657-661. PDF